PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W06MF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 360aa    MW: 39980.3 Da    PI: 9.5307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W06MFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012224246123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cgk+F+++  L +H + +
  Aradu.W06MF 224 HQCENCGKTFRSSRALGSHRSIC 246
                  79*****************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.5527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307532IPR007087Zinc finger, C2H2
PfamPF139124.3E-7628IPR007087Zinc finger, C2H2
PROSITE patternPS000280627IPR007087Zinc finger, C2H2
SuperFamilySSF576675.12E-7627No hitNo description
SuperFamilySSF576675.12E-7219243No hitNo description
PfamPF139120.004224243IPR007087Zinc finger, C2H2
PROSITE profilePS501578.933224245IPR007087Zinc finger, C2H2
SMARTSM0035530224244IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-8259282IPR007087Zinc finger, C2H2
SMARTSM003550.2259281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245259281IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERQKCCKLC SRTFPNGRAL GGHMKAHLAT FPLPPKPPQP PAPPLPSSES SSSFSSFSES  60
EPEDKTALIY GLRENPKKSF RVADPEFSPL AAPLLPPPDS VAVQDRESET ESSKKPTRQR  120
SKRTWRARSI LHNHEDDKEQ LKKKQPKLGF MEHEHEYEAE PVSSVSETSV VEDVAMFLVM  180
LSRDTWSNKD AILVKQEGEV ERSKAGSGNG IKMKKVRVRG KHSHQCENCG KTFRSSRALG  240
SHRSICCDGG GSGASDRIFQ CPFCFKIFGS GQALGGHKRS HLIAMAAPSS SSSTAKNFID  300
LNLPAPLEEQ HEDDLGVVSD TLSSALKRTK YPGKRREVPY NSYRRISQVY DNKVQDMLIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RQRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962034.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLG7JIV82e-92G7JIV8_MEDTR; C2H2-type zinc-finger protein, putative
STRINGGLYMA01G41780.15e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-31C2H2-like zinc finger protein